Submodules#
graph-tool is subdivided into the following submodules:
graph_tool- Graph
- GraphView
- Vertex
- Edge
- PropertyMap
- VertexPropertyMap
- EdgePropertyMap
- GraphPropertyMap
- PropertyArray
- group_vector_property
- ungroup_vector_property
- map_property_values
- infect_vertex_property
- edge_endpoint_property
- incident_edges_op
- perfect_prop_hash
- value_types
- load_graph
- load_graph_from_csv
- openmp_enabled
- openmp_get_num_threads
- openmp_set_num_threads
- openmp_get_schedule
- openmp_set_schedule
- openmp_get_thresh
- openmp_set_thresh
- show_config
graph_tool.centralitygraph_tool.clusteringgraph_tool.collection- LCF_graph
- bull_graph
- chvatal_graph
- cubical_graph
- desargues_graph
- diamond_graph
- dodecahedral_graph
- frucht_graph
- heawood_graph
- hoffman_singleton_graph
- house_graph
- icosahedral_graph
- krackhardt_kite_graph
- moebius_kantor_graph
- octahedral_graph
- pappus_graph
- petersen_graph
- sedgewick_maze_graph
- tetrahedral_graph
- truncated_cube_graph
- truncated_tetrahedron_graph
- tutte_graph
graph_tool.correlationsgraph_tool.dynamics- DiscreteStateBase
- EpidemicStateBase
- SIState
- SISState
- SIRState
- SIRSState
- VoterState
- MajorityVoterState
- BinaryThresholdState
- IsingGlauberState
- CIsingGlauberState
- IsingMetropolisState
- PottsGlauberState
- PottsMetropolisState
- AxelrodState
- BooleanState
- KirmanState
- NormalState
- LinearNormalState
- ContinuousStateBase
- LinearState
- LVState
- KuramotoState
- BPBaseState
- GenPottsBPState
- IsingBPState
- NormalBPState
graph_tool.drawgraph_tool.flowgraph_tool.generation- random_graph
- random_rewire
- add_random_edges
- remove_random_edges
- generate_triadic_closure
- price_network
- generate_sbm
- generate_maxent_sbm
- solve_sbm_fugacities
- generate_knn
- geometric_graph
- triangulation
- predecessor_tree
- line_graph
- condensation_graph
- contract_parallel_edges
- remove_parallel_edges
- expand_parallel_edges
- label_parallel_edges
- remove_self_loops
- label_self_loops
- graph_union
- lattice
- complete_graph
- circular_graph
graph_tool.inference- minimize_blockmodel_dl
- minimize_nested_blockmodel_dl
- BlockState
- OverlapBlockState
- LayeredBlockState
- NestedBlockState
- PPBlockState
- RankedBlockState
- ModularityState
- NormCutState
- TemperingState
- CliqueState
- EntropyState
- MCMCState
- MultiflipMCMCState
- MultilevelMCMCState
- GibbsMCMCState
- MulticanonicalMCMCState
- ExhaustiveSweepState
- DrawBlockState
- mcmc_equilibrate
- mcmc_anneal
- multicanonical_equilibrate
- MulticanonicalState
- PartitionModeState
- ModeClusterState
- PartitionCentroidState
- partition_overlap
- nested_partition_overlap
- variation_information
- mutual_information
- reduced_mutual_information
- contingency_graph
- shuffle_partition_labels
- order_partition_labels
- order_nested_partition_labels
- align_partition_labels
- align_nested_partition_labels
- partition_overlap_center
- nested_partition_overlap_center
- nested_partition_clear_null
- contiguous_map
- nested_contiguous_map
- mf_entropy
- bethe_entropy
- microstate_entropy
- marginal_multigraph_entropy
- half_edge_graph
- get_block_edge_gradient
- PartitionHist
- BlockPairHist
- LatentLayerBaseState
- LatentMultigraphBlockState
- LatentClosureBlockState
- MeasuredBlockState
- MeasuredClosureBlockState
- MixedMeasuredBlockState
- UncertainBlockState
- UncertainBaseState
- latent_multigraph
- DynamicsBlockStateBase
- BPBlockStateBase
- PseudoNormalBlockState
- NormalGlauberBlockState
- LinearNormalBlockState
- LVBlockState
- EpidemicsBlockState
- IsingBlockStateBase
- IsingGlauberBlockState
- CIsingGlauberBlockState
- PseudoIsingBlockState
- PseudoCIsingBlockState
- EMBlockState
- em_infer
- modularity
graph_tool.searchgraph_tool.spectralgraph_tool.statsgraph_tool.topology- shortest_distance
- shortest_path
- random_shortest_path
- count_shortest_paths
- all_shortest_paths
- all_predecessors
- all_paths
- all_circuits
- pseudo_diameter
- similarity
- vertex_similarity
- isomorphism
- subgraph_isomorphism
- mark_subgraph
- max_cliques
- max_cardinality_matching
- max_independent_vertex_set
- min_spanning_tree
- random_spanning_tree
- dominator_tree
- topological_sort
- transitive_closure
- label_components
- label_biconnected_components
- label_largest_component
- extract_largest_component
- label_out_component
- vertex_percolation
- edge_percolation
- kcore_decomposition
- is_bipartite
- is_DAG
- is_planar
- make_maximal_planar
- edge_reciprocity
- tsp_tour
- sequential_vertex_coloring
graph_tool.util