Index

A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | T | U | V | Z

A

a (graph_tool.PropertyMap attribute)
add_edge() (graph_tool.Graph method)
add_edge_list() (graph_tool.Graph method)
add_vertex() (graph_tool.Graph method)
(graph_tool.inference.BlockState method)
(graph_tool.inference.NestedBlockState method)
adjacency() (in module graph_tool.spectral)
all_circuits() (in module graph_tool.topology)
all_edges() (graph_tool.Vertex method)
all_neighbours() (graph_tool.Vertex method)
all_paths() (in module graph_tool.topology)
all_predecessors() (in module graph_tool.topology)
all_shortest_paths() (in module graph_tool.topology)
angle_changed() (graph_tool.draw.GraphWidget method)
apply_transform() (graph_tool.draw.GraphWidget method)
arf_layout() (in module graph_tool.draw)
asdict() (graph_tool.inference.BlockPairHist method)
(graph_tool.inference.PartitionHist method)
assortativity() (in module graph_tool.correlations)
astar_iterator() (in module graph_tool.search)
astar_search() (in module graph_tool.search)
AStarVisitor (class in graph_tool.search)
avg_combined_corr() (in module graph_tool.correlations)
avg_neighbour_corr() (in module graph_tool.correlations)

B

back_edge() (graph_tool.search.DFSVisitor method)
base (graph_tool.GraphView attribute)
bellman_ford_search() (in module graph_tool.search)
BellmanFordVisitor (class in graph_tool.search)
bethe_entropy() (in module graph_tool.inference)
betweenness() (in module graph_tool.centrality)
bfs_iterator() (in module graph_tool.search)
bfs_search() (in module graph_tool.search)
BFSVisitor (class in graph_tool.search)
bisection_minimize() (in module graph_tool.inference)
black_target() (graph_tool.search.AStarVisitor method)
(graph_tool.search.BFSVisitor method)
BlockPairHist (class in graph_tool.inference)
BlockState (class in graph_tool.inference)
boykov_kolmogorov_max_flow() (in module graph_tool.flow)
button_press_event() (graph_tool.draw.GraphWidget method)
button_release_event() (graph_tool.draw.GraphWidget method)

C

cairo_draw() (in module graph_tool.draw)
central_point_dominance() (in module graph_tool.centrality)
circular_graph() (in module graph_tool.generation)
cleanup() (graph_tool.draw.GraphWidget method)
clear() (graph_tool.Graph method)
clear_edges() (graph_tool.Graph method)
clear_filters() (graph_tool.Graph method)
clear_vertex() (graph_tool.Graph method)
closeness() (in module graph_tool.centrality)
collect_edge_marginals() (graph_tool.inference.BlockState method)
collect_partition_histogram() (graph_tool.inference.BlockState method)
(graph_tool.inference.NestedBlockState method)
collect_vertex_marginals() (graph_tool.inference.BlockState method)
combined_corr_hist() (in module graph_tool.correlations)
complete_graph() (in module graph_tool.generation)
condensation_graph() (in module graph_tool.generation)
copy() (graph_tool.Graph method)
(graph_tool.PropertyMap method)
(graph_tool.inference.BlockState method)
(graph_tool.inference.LayeredBlockState method)
(graph_tool.inference.NestedBlockState method)
(graph_tool.inference.OverlapBlockState method)
copy_property() (graph_tool.Graph method)
corr_hist() (in module graph_tool.correlations)

D

data (in module graph_tool.collection)
data_ptr() (graph_tool.PropertyMap method)
degree_property_map() (graph_tool.Graph method)
delete_level() (graph_tool.inference.NestedBlockState method)
descriptions (in module graph_tool.collection)
dfs_iterator() (in module graph_tool.search)
dfs_search() (in module graph_tool.search)
DFSVisitor (class in graph_tool.search)
dijkstra_iterator() (in module graph_tool.search)
dijkstra_search() (in module graph_tool.search)
DijkstraVisitor (class in graph_tool.search)
discover_vertex() (graph_tool.search.AStarVisitor method)
(graph_tool.search.BFSVisitor method)
(graph_tool.search.DFSVisitor method)
(graph_tool.search.DijkstraVisitor method)
distance_histogram() (in module graph_tool.stats)
dominator_tree() (in module graph_tool.topology)
drag_gesture_begin() (graph_tool.draw.GraphWidget method)
drag_gesture_end() (graph_tool.draw.GraphWidget method)
drag_gesture_update() (graph_tool.draw.GraphWidget method)
draw() (graph_tool.draw.GraphWidget method)
(graph_tool.inference.BlockState method)
(graph_tool.inference.EMBlockState method)
(graph_tool.inference.LayeredBlockState method)
(graph_tool.inference.NestedBlockState method)
(graph_tool.inference.OverlapBlockState method)
draw_hierarchy() (in module graph_tool.draw)
duplicate_level() (graph_tool.inference.NestedBlockState method)

E

e_iter() (graph_tool.inference.EMBlockState method)
Edge (class in graph_tool)
edge() (graph_tool.Graph method)
edge_average() (in module graph_tool.stats)
edge_endpoint_property() (in module graph_tool)
edge_hist() (in module graph_tool.stats)
edge_index (graph_tool.Graph attribute)
edge_index_range (graph_tool.Graph attribute)
edge_minimized() (graph_tool.search.BellmanFordVisitor method)
edge_not_minimized() (graph_tool.search.BellmanFordVisitor method)
edge_not_relaxed() (graph_tool.search.AStarVisitor method)
(graph_tool.search.BellmanFordVisitor method)
(graph_tool.search.DijkstraVisitor method)
edge_properties (graph_tool.Graph attribute)
edge_reciprocity() (in module graph_tool.topology)
edge_relaxed() (graph_tool.search.AStarVisitor method)
(graph_tool.search.BellmanFordVisitor method)
(graph_tool.search.DijkstraVisitor method)
edges() (graph_tool.Graph method)
edmonds_karp_max_flow() (in module graph_tool.flow)
eigentrust() (in module graph_tool.centrality)
eigenvector() (in module graph_tool.centrality)
em_infer() (in module graph_tool.inference)
EMBlockState (class in graph_tool.inference)
entropy() (graph_tool.inference.BlockState method)
(graph_tool.inference.LayeredBlockState method)
(graph_tool.inference.NestedBlockState method)
(graph_tool.inference.OverlapBlockState method)
(graph_tool.inference.TemperingState method)
ep (graph_tool.Graph attribute)
examine_edge() (graph_tool.search.AStarVisitor method)
(graph_tool.search.BFSVisitor method)
(graph_tool.search.BellmanFordVisitor method)
(graph_tool.search.DFSVisitor method)
(graph_tool.search.DijkstraVisitor method)
examine_vertex() (graph_tool.search.AStarVisitor method)
(graph_tool.search.BFSVisitor method)
(graph_tool.search.DijkstraVisitor method)
exhaustive_sweep() (graph_tool.inference.BlockState method)
extended_clustering() (in module graph_tool.clustering)

F

fa (graph_tool.PropertyMap attribute)
find_edge() (in module graph_tool.util)
find_edge_range() (in module graph_tool.util)
find_new_level() (graph_tool.inference.NestedBlockState method)
find_vertex() (in module graph_tool.util)
find_vertex_range() (in module graph_tool.util)
finish_vertex() (graph_tool.search.AStarVisitor method)
(graph_tool.search.BFSVisitor method)
(graph_tool.search.DFSVisitor method)
(graph_tool.search.DijkstraVisitor method)
fit_to_window() (graph_tool.draw.GraphWidget method)
forward_or_cross_edge() (graph_tool.search.DFSVisitor method)
fruchterman_reingold_layout() (in module graph_tool.draw)

G

geometric_graph() (in module graph_tool.generation)
get_2d_array() (graph_tool.PropertyMap method)
get_ak() (graph_tool.inference.EMBlockState method)
get_allowed_energies() (graph_tool.inference.MulticanonicalState method)
get_array() (graph_tool.PropertyMap method)
get_B() (graph_tool.inference.BlockState method)
(graph_tool.inference.LayeredBlockState method)
(graph_tool.inference.OverlapBlockState method)
get_bclabel() (graph_tool.inference.BlockState method)
get_bg() (graph_tool.inference.BlockState method)
(graph_tool.inference.LayeredBlockState method)
get_block_edge_gradient() (in module graph_tool.inference)
get_block_state() (graph_tool.inference.BlockState method)
(graph_tool.inference.LayeredBlockState method)
(graph_tool.inference.OverlapBlockState method)
get_blocks() (graph_tool.inference.BlockState method)
get_bpclabel() (graph_tool.inference.BlockState method)
get_bs() (graph_tool.inference.NestedBlockState method)
get_bstack() (graph_tool.inference.NestedBlockState method)
get_clabel() (graph_tool.inference.NestedBlockState method)
get_data_path() (in module graph_tool.collection)
get_density() (graph_tool.inference.MulticanonicalState method)
get_E() (graph_tool.inference.BlockState method)
(graph_tool.inference.LayeredBlockState method)
(graph_tool.inference.OverlapBlockState method)
get_edge_blocks() (graph_tool.inference.LayeredBlockState method)
(graph_tool.inference.OverlapBlockState method)
get_edge_filter() (graph_tool.Graph method)
get_edges_prob() (graph_tool.inference.BlockState method)
(graph_tool.inference.LayeredBlockState method)
(graph_tool.inference.NestedBlockState method)
get_energies() (graph_tool.inference.MulticanonicalState method)
get_er() (graph_tool.inference.BlockState method)
get_ers() (graph_tool.inference.BlockState method)
get_fast_edge_removal() (graph_tool.Graph method)
get_fe() (graph_tool.inference.EMBlockState method)
get_flatness() (graph_tool.inference.MulticanonicalState method)
get_graph() (graph_tool.PropertyMap method)
get_group_sizes() (graph_tool.inference.EMBlockState method)
get_hierarchy_control_points() (in module graph_tool.draw)
get_hierarchy_tree() (in module graph_tool.inference)
get_hist() (graph_tool.inference.MulticanonicalState method)
get_levels() (graph_tool.inference.NestedBlockState method)
get_majority_blocks() (graph_tool.inference.LayeredBlockState method)
(graph_tool.inference.OverlapBlockState method)
get_MAP() (graph_tool.inference.EMBlockState method)
get_matrix() (graph_tool.inference.BlockState method)
(graph_tool.inference.EMBlockState method)
get_move_prob() (graph_tool.inference.BlockState method)
get_N() (graph_tool.inference.BlockState method)
(graph_tool.inference.LayeredBlockState method)
(graph_tool.inference.OverlapBlockState method)
get_nonempty_B() (graph_tool.inference.BlockState method)
(graph_tool.inference.LayeredBlockState method)
(graph_tool.inference.OverlapBlockState method)
get_nonoverlap_blocks() (graph_tool.inference.LayeredBlockState method)
(graph_tool.inference.OverlapBlockState method)
get_nr() (graph_tool.inference.BlockState method)
get_overlap_blocks() (graph_tool.inference.LayeredBlockState method)
(graph_tool.inference.OverlapBlockState method)
get_perm_hist() (graph_tool.inference.MulticanonicalState method)
get_posterior() (graph_tool.inference.MulticanonicalState method)
get_range() (graph_tool.inference.MulticanonicalState method)
get_vertex_filter() (graph_tool.Graph method)
get_vertex_marginals() (graph_tool.inference.EMBlockState method)
gibbs_sweep() (graph_tool.inference.BlockState method)
(graph_tool.inference.NestedBlockState method)
(graph_tool.inference.TemperingState method)
global_clustering() (in module graph_tool.clustering)
gp (graph_tool.Graph attribute)
Graph (class in graph_tool)
graph_draw() (in module graph_tool.draw)
graph_properties (graph_tool.Graph attribute)
graph_tool (module)
graph_tool.centrality (module)
graph_tool.clustering (module)
graph_tool.collection (module)
graph_tool.correlations (module)
graph_tool.draw (module)
graph_tool.flow (module)
graph_tool.generation (module)
graph_tool.inference (module)
graph_tool.search (module)
graph_tool.spectral (module)
graph_tool.stats (module)
graph_tool.topology (module)
graph_tool.util (module)
graph_union() (in module graph_tool.generation)
GraphView (class in graph_tool)
graphviz_draw() (in module graph_tool.draw)
GraphWidget (class in graph_tool.draw)
GraphWindow (class in graph_tool.draw)
gray_target() (graph_tool.search.BFSVisitor method)
group_vector_property() (in module graph_tool)

H

half_edge_graph() (in module graph_tool.inference)
hierarchy_minimize() (in module graph_tool.inference)
hits() (in module graph_tool.centrality)

I

in_degree() (graph_tool.Vertex method)
in_neighbours() (graph_tool.Vertex method)
incidence() (in module graph_tool.spectral)
incident_edges_op() (in module graph_tool)
infect_vertex_property() (in module graph_tool)
init_picked() (graph_tool.draw.GraphWidget method)
initialize_vertex() (graph_tool.search.AStarVisitor method)
(graph_tool.search.BFSVisitor method)
(graph_tool.search.DFSVisitor method)
(graph_tool.search.DijkstraVisitor method)
interactive_window() (in module graph_tool.draw)
is_bipartite() (in module graph_tool.topology)
is_DAG() (in module graph_tool.topology)
is_directed() (graph_tool.Graph method)
is_planar() (in module graph_tool.topology)
is_reversed() (graph_tool.Graph method)
is_valid() (graph_tool.Edge method)
(graph_tool.Vertex method)
is_writable() (graph_tool.PropertyMap method)
isomorphism() (in module graph_tool.topology)

K

katz() (in module graph_tool.centrality)
kcore_decomposition() (in module graph_tool.topology)
key_press_event() (graph_tool.draw.GraphWidget method)
key_release_event() (graph_tool.draw.GraphWidget method)
key_type() (graph_tool.PropertyMap method)
konect_data (in module graph_tool.collection)

L

label_biconnected_components() (in module graph_tool.topology)
label_components() (in module graph_tool.topology)
label_largest_component() (in module graph_tool.topology)
label_out_component() (in module graph_tool.topology)
label_parallel_edges() (in module graph_tool.stats)
label_self_loops() (in module graph_tool.stats)
laplacian() (in module graph_tool.spectral)
lattice() (in module graph_tool.generation)
LayeredBlockState (class in graph_tool.inference)
layout_callback() (graph_tool.draw.GraphWidget method)
learn() (graph_tool.inference.EMBlockState method)
level_entropy() (graph_tool.inference.NestedBlockState method)
line_graph() (in module graph_tool.generation)
list_properties() (graph_tool.Graph method)
load() (graph_tool.Graph method)
load_graph() (in module graph_tool)
load_graph_from_csv() (in module graph_tool)
local_clustering() (in module graph_tool.clustering)

M

m_iter() (graph_tool.inference.EMBlockState method)
ma (graph_tool.PropertyMap attribute)
make_maximal_planar() (in module graph_tool.topology)
map_property_values() (in module graph_tool)
mark_subgraph() (in module graph_tool.topology)
max_cardinality_matching() (in module graph_tool.topology)
max_independent_vertex_set() (in module graph_tool.topology)
mcmc_anneal() (in module graph_tool.inference)
mcmc_equilibrate() (in module graph_tool.inference)
mcmc_multilevel() (in module graph_tool.inference)
mcmc_sweep() (graph_tool.inference.BlockState method)
(graph_tool.inference.LayeredBlockState method)
(graph_tool.inference.NestedBlockState method)
(graph_tool.inference.OverlapBlockState method)
(graph_tool.inference.TemperingState method)
merge_sweep() (graph_tool.inference.BlockState method)
merge_vertices() (graph_tool.inference.BlockState method)
mf_entropy() (in module graph_tool.inference)
microstate_entropy() (in module graph_tool.inference)
min_cut() (in module graph_tool.flow)
min_spanning_tree() (in module graph_tool.topology)
min_st_cut() (in module graph_tool.flow)
minimize_blockmodel_dl() (in module graph_tool.inference)
minimize_nested_blockmodel_dl() (in module graph_tool.inference)
model_entropy() (in module graph_tool.inference)
modularity_matrix() (in module graph_tool.spectral)
motif_significance() (in module graph_tool.clustering)
motifs() (in module graph_tool.clustering)
motion_notify_event() (graph_tool.draw.GraphWidget method)
move_vertex() (graph_tool.inference.BlockState method)
(graph_tool.inference.NestedBlockState method)
multicanonical_equilibrate() (in module graph_tool.inference)
multicanonical_sweep() (graph_tool.inference.BlockState method)
(graph_tool.inference.NestedBlockState method)
MulticanonicalState (class in graph_tool.inference)
multiflip_mcmc_sweep() (graph_tool.inference.BlockState method)
(graph_tool.inference.NestedBlockState method)

N

NestedBlockState (class in graph_tool.inference)
new_edge_property() (graph_tool.Graph method)
new_ep() (graph_tool.Graph method)
new_gp() (graph_tool.Graph method)
new_graph_property() (graph_tool.Graph method)
new_property() (graph_tool.Graph method)
new_vertex_property() (graph_tool.Graph method)
new_vp() (graph_tool.Graph method)
non_tree_edge() (graph_tool.search.BFSVisitor method)
num_edges() (graph_tool.Graph method)
num_vertices() (graph_tool.Graph method)

O

out_degree() (graph_tool.Vertex method)
out_neighbours() (graph_tool.Vertex method)
OverlapBlockState (class in graph_tool.inference)

P

pagerank() (in module graph_tool.centrality)
PartitionHist (class in graph_tool.inference)
perfect_prop_hash() (in module graph_tool)
planar_layout() (in module graph_tool.draw)
pos_from_device() (graph_tool.draw.GraphWidget method)
pos_to_device() (graph_tool.draw.GraphWidget method)
predecessor_tree() (in module graph_tool.generation)
price_network() (in module graph_tool.generation)
print_summary() (graph_tool.inference.NestedBlockState method)
project_level() (graph_tool.inference.NestedBlockState method)
project_partition() (graph_tool.inference.NestedBlockState method)
prop_map (graph_tool.PropertyArray attribute)
prop_to_size() (in module graph_tool.draw)
propagate_clabel() (graph_tool.inference.NestedBlockState method)
properties (graph_tool.Graph attribute)
PropertyArray (class in graph_tool)
PropertyMap (class in graph_tool)
pseudo_diameter() (in module graph_tool.topology)
purge_edges() (graph_tool.Graph method)
purge_vertices() (graph_tool.Graph method)
push_relabel_max_flow() (in module graph_tool.flow)
python_value_type() (graph_tool.PropertyMap method)

R

radial_tree_layout() (in module graph_tool.draw)
random_graph() (in module graph_tool.generation)
random_layout() (in module graph_tool.draw)
random_rewire() (in module graph_tool.generation)
random_spanning_tree() (in module graph_tool.topology)
regenerate_surface() (graph_tool.draw.GraphWidget method)
reindex_edges() (graph_tool.Graph method)
remove_edge() (graph_tool.Graph method)
remove_labeled_edges() (in module graph_tool.stats)
remove_parallel_edges() (in module graph_tool.stats)
remove_self_loops() (in module graph_tool.stats)
remove_vertex() (graph_tool.Graph method)
(graph_tool.inference.BlockState method)
(graph_tool.inference.NestedBlockState method)
replace_level() (graph_tool.inference.NestedBlockState method)
reserve() (graph_tool.PropertyMap method)
reset_hist() (graph_tool.inference.MulticanonicalState method)
reset_layout() (graph_tool.draw.GraphWidget method)
resize() (graph_tool.PropertyMap method)
rotate_begin() (graph_tool.draw.GraphWidget method)
rotate_end() (graph_tool.draw.GraphWidget method)

S

sample_vertex_move() (graph_tool.inference.BlockState method)
save() (graph_tool.Graph method)
scalar_assortativity() (in module graph_tool.correlations)
scale_changed() (graph_tool.draw.GraphWidget method)
scroll_event() (graph_tool.draw.GraphWidget method)
sequential_vertex_coloring() (in module graph_tool.topology)
set_2d_array() (graph_tool.PropertyMap method)
set_blocks() (graph_tool.inference.BlockState method)
set_directed() (graph_tool.Graph method)
set_edge_filter() (graph_tool.Graph method)
set_fast_edge_removal() (graph_tool.Graph method)
set_filters() (graph_tool.Graph method)
set_reversed() (graph_tool.Graph method)
set_value() (graph_tool.PropertyMap method)
set_vertex_filter() (graph_tool.Graph method)
sfdp_layout() (in module graph_tool.draw)
shortest_distance() (in module graph_tool.topology)
shortest_path() (in module graph_tool.topology)
show_config() (in module graph_tool)
shrink() (graph_tool.inference.BlockState method)
(graph_tool.inference.LayeredBlockState method)
(graph_tool.inference.OverlapBlockState method)
shrink_to_fit() (graph_tool.Graph method)
(graph_tool.PropertyMap method)
similarity() (in module graph_tool.topology)
source() (graph_tool.Edge method)
start_vertex() (graph_tool.search.DFSVisitor method)
states_move() (graph_tool.inference.TemperingState method)
states_swap() (graph_tool.inference.TemperingState method)
StopSearch
subgraph_isomorphism() (in module graph_tool.topology)

T

target() (graph_tool.Edge method)
TemperingState (class in graph_tool.inference)
topological_sort() (in module graph_tool.topology)
transition() (in module graph_tool.spectral)
transitive_closure() (in module graph_tool.topology)
tree_edge() (graph_tool.search.BFSVisitor method)
(graph_tool.search.DFSVisitor method)
triangulation() (in module graph_tool.generation)
trust_transitivity() (in module graph_tool.centrality)
tsp_tour() (in module graph_tool.topology)

U

ungroup_vector_property() (in module graph_tool)

V

value_type() (graph_tool.PropertyMap method)
value_types() (in module graph_tool)
Vertex (class in graph_tool)
vertex() (graph_tool.Graph method)
vertex_average() (in module graph_tool.stats)
vertex_hist() (in module graph_tool.stats)
vertex_index (graph_tool.Graph attribute)
vertex_properties (graph_tool.Graph attribute)
vertex_similarity() (in module graph_tool.topology)
vertices() (graph_tool.Graph method)
virtual_vertex_move() (graph_tool.inference.BlockState method)
vp (graph_tool.Graph attribute)

Z

zoom_begin() (graph_tool.draw.GraphWidget method)
zoom_end() (graph_tool.draw.GraphWidget method)